Rex L Chisholm

Most Recent Publications

• A compendium of human gene functions derived from evolutionary modelling

  Feuermann M, Mi H, Gaudet P, Muruganujan A, Lewis SE, Ebert D, Mushayahama T, Westerfield M, Ruzicka L, Ramachandran S, Zorn A, Ponferrada V, James-Zorn C, Fisher M, Raciti D, Diamantakis S, Chan J, Zaru R, Warner K, Tyagi N, Speretta E, Raposo P, Orchard S, Martin MJ, Magrane M, Lussi Y, Lock A, Ishtiaq R, Ignatchenko A, Denny P, Bye-A-Jee H, Bowler-Barnett E, Sundaram S, Rivoire C, Poux S, Pourcel L, Pedruzzi I, Morgat A, Masson P, Lieberherr D, Le Mercier P, Jungo F, Hyka-Nouspikel N, Hulo C, Gruaz-Gumowski N, Gos A, Famiglietti ML, Estreicher A, Coudert E, Casals-Casas C, Bridge A, Breuza L, Boutet E, Blatter MC, Argoud-Puy G, Axelsen K, Auchincloss A, Reiser L, Berardini TZ, Bakker E, Verpelli C, Verhage M, van Weering JRT, Toonen RF, Smit AB, Smalla KH, Sheng M, Sala C, Ryan TA, Pielot R, O’Connor V, McPherson PS, MacGillavry HD, Lipstein N, Kreutz MR, Koopmans F, Kim E, Kaeser PS, Jung H, Jahn R, Imig C, Huganir RL, Gundelfinger ED, Goldschmidt HL, de Juan-Sanz J, Cornelisse LN, Coba MP, Chua JJE, Brose N, Biederer T, Bayés À, Bagni C, Andres-Alonso M, Achsel T, Wong ED, Weng S, Skrzypek MS, Nash RS, Miyasato SR, Karra K

  Nature. 2025 Jan;

  https://doi.org/10.1038/s41586-025-08592-0

  ISSN: 0028-0836
• A genomic mutational constraint map using variation in 76,156 human genomes( vol 625 , pg 92 , 2024)

  Chen S, Francioli LC, Goodrich JK, Collins RL, Kanai M, Wang Q, Alfoeldi J, Watts NA, Vittal C, Gauthier LD, Poterba T, Wilson MW, Tarasova Y, Phu W, Grant R, Yohannes MT, Koenig Z, Farjoun Y, Banks E, Donnelly S, Gabriel S, Gupta N, Ferriera S, Tolonen C, Novod S, Bergelson L, Roazen D, Ruano-Rubio V, Covarrubias M, Llanwarne C, Petrillo N, Wade G, Jeandet T, Munshi R, Tibbetts K, Abreu M, Aguilar Salinas CA, Ahmad T, Albert CM, Ardissino D, Armean IM, Atkinson EG, Atzmon G, Barnard J, Baxter SM, Beaugerie L, Benjamin EJ, Benjamin D, Boehnke M, Bonnycastle LL, Bottinger EP, Bowden DW, Bown MJ, Brand H, Brant S, Brookings T, Bryant S, Calvo SE, Campos H, Chambers JC, Chan JC, Chao KR, Chapman S, Chasman DI, Chisholm R, Cho J, Chowdhury R, Chung MK, Chung WK, Cibulskis K, Cohen B, Connolly KM, Correa A, Cummings BB, Dabelea D, Danesh J, Darbar D, Darnowsky P, Denny J, Duggirala R, Dupuis J, Ellinor PT, Elosua R, Emery J, England E, Erdmann J, Esko T, Evangelista E, Fatkin D, Florez J, Franke A, Fu J, Faerkkilae M, Garimella K, Gentry J, Getz G, Glahn DC, Glaser B, Glatt SJ, Goldstein D, Gonzalez C, Groop L, Gudmundsson S, Haessly A, Haiman C, Hall I, Hanis CL, Harms M, Hiltunen M, Holi MM, Hultman CM, Jalas C, Kallela M, Kaplan D, Kaprio J, Kathiresan S, Kenny EE, Kim B-J, Kim YJ, King D, Kirov G, Kooner J, Koskinen S, Krumholz HM, Kugathasan S, Kwak SH, Laakso M, Lake N, Langsford T, Laricchia KM, Lehtimaeki T, Lek M, Lipscomb E, Loos RJF, Lu W, Lubitz SA, Luna TT, Ma RCW, Marcus GM, Marrugat J, Mattila KM, Mccarroll S, Mccarthy MI, Mccauley JL, Mcgovern D, Mcpherson R, Meigs JB, Melander O, Metspalu A, Meyers D, Minikel EV, Mitchell BD, Mootha VK, Naheed A, Nazarian S, Nilsson PM, O'Donovan MC, Okada Y, Ongur D, Orozco L, Owen MJ, Palmer C, Palmer ND, Palotie A, Park KS, Pato C, Pulver AE, Rader D, Rahman N, Reiner A, Remes AM, Rhodes D, Rich S, Rioux JD, Ripatti S, Roden DM, Rotter JI, Sahakian N, Saleheen D, Salomaa V, Saltzman A, Samani NJ, Samocha KE, Sanchis-Juan A, Scharf J, Schleicher M, Schunkert H, Schoenherr S, Seaby EG, Shah SH, Shand M, Sharpe T, Shoemaker MB, Shyong T, Silverman EK, Singer-Berk M, Sklar P, Smith JT, Smith JG, Soininen H, Sokol H, Son RG, Soto J, Spector T, Stevens C, Stitziel NO, Sullivan PF, Suvisaari J, Tai ES, Taylor KD, Teo YY, Tsuang M, Tuomi T, Turner D, Tusie-Luna T, Vartiainen E, Vawter M, Wang L, Wang A, Ware JS, Watkins H, Weersma RK, Weisburd B, Wessman M, Whiffin N, Wilson JG, Xavier RJ, O'Donnell-Luria A, Solomonson M, Seed C, Martin AR, Talkowski ME, Rehm HL, Daly MJ, Tiao G, Neale BM, Macarthur DG, Karczewski KJ

  NATURE. 2024 Jan;

  https://doi.org/10.1038/s41586-024-07050-7

  ISSN: 0028-0836
• A genomic mutational constraint map using variation in 76,156 human genomes.

  Chen S, Francioli LC, Goodrich JK, Collins RL, Kanai M, Wang Q, Alföldi J, Watts NA, Vittal C, Gauthier LD, Poterba T, Wilson MW, Tarasova Y, Phu W, Grant R, Yohannes MT, Koenig Z, Farjoun Y, Banks E, Donnelly S, Gabriel S, Gupta N, Ferriera S, Tolonen C, Novod S, Bergelson L, Roazen D, Ruano-Rubio V, Covarrubias M, Llanwarne C, Petrillo N, Wade G, Jeandet T, Munshi R, Tibbetts K, Genome Aggregation Database Consortium , O'Donnell-Luria A, Solomonson M, Seed C, Martin AR, Talkowski ME, Rehm HL, Daly MJ, Tiao G, Neale BM, MacArthur DG, Karczewski KJ

  Nature. 2024 Jan; 625(7993): 92-100.

  https://doi.org/10.1038/s41586-023-06045-0

  PMID: 38057664
• The Gene Ontology knowledgebase in 2023.

  Gene Ontology Consortium , Aleksander SA, Balhoff J, Carbon S, Cherry JM, Drabkin HJ, Ebert D, Feuermann M, Gaudet P, Harris NL, Hill DP, Lee R, Mi H, Moxon S, Mungall CJ, Muruganugan A, Mushayahama T, Sternberg PW, Thomas PD, Van Auken K, Ramsey J, Siegele DA, Chisholm RL, Fey P, Aspromonte MC, Nugnes MV, Quaglia F, Tosatto S, Giglio M, Nadendla S, Antonazzo G, Attrill H, Dos Santos G, Marygold S, Strelets V, Tabone CJ, Thurmond J, Zhou P, Ahmed SH, Asanitthong P, Luna Buitrago D, Erdol MN, Gage MC, Ali Kadhum M, Li KYC, Long M, Michalak A, Pesala A, Pritazahra A, Saverimuttu SCC, Su R, Thurlow KE, Lovering RC, Logie C, Oliferenko S, Blake J, Christie K, Corbani L, Dolan ME, Drabkin HJ, Hill DP, Ni L, Sitnikov D, Smith C, Cuzick A, Seager J, Cooper L, Elser J, Jaiswal P, Gupta P, Jaiswal P, Naithani S, Lera-Ramirez M, Rutherford K, Wood V, De Pons JL, Dwinell MR, Hayman GT, Kaldunski ML, Kwitek AE, Laulederkind SJF, Tutaj MA, Vedi M, Wang S-J, D'Eustachio P, Aimo L, Axelsen K, Bridge A, Hyka-Nouspikel N, Morgat A, Aleksander SA, Cherry JM, Engel SR, Karra K, Miyasato SR, Nash RS, Skrzypek MS, Weng S, Wong ED, Bakker E, Berardini TZ, Reiser L, Auchincloss A, Axelsen K, Argoud-Puy G, Blatter M-C, Boutet E, Breuza L, Bridge A, Casals-Casas C, Coudert E, Estreicher A, Livia Famiglietti M, Feuermann M, Gos A, Gruaz-Gumowski N, Hulo C, Hyka-Nouspikel N, Jungo F, Le Mercier P, Lieberherr D, Masson P, Morgat A, Pedruzzi I, Pourcel L, Poux S, Rivoire C, Sundaram S, Bateman A, Bowler-Barnett E, Bye-A-Jee H, Denny P, Ignatchenko A, Ishtiaq R, Lock A, Lussi Y, Magrane M, Martin MJ, Orchard S, Raposo P, Speretta E, Tyagi N, Warner K, Zaru R, Diehl AD, Lee R, Chan J, Diamantakis S, Raciti D, Zarowiecki M, Fisher M, James-Zorn C, Ponferrada V, Zorn A, Ramachandran S, Ruzicka L, Westerfield M

  Genetics. 2023 May; 224(1):

  https://doi.org/10.1093/genetics/iyad031

  PMID: 36866529

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